PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03370
Common NameGSCOC_T00039565001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 363aa    MW: 39027 Da    PI: 8.0626
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1123.1e-3576132459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  v+YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+ee
  Cc07_g03370  76 VTYKECLKNHAASLGGHAVDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPEE 132
                  79******************************9********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2976130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-3277129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20778129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1778128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-29219287IPR009057Homeodomain-like
SuperFamilySSF466892.09E-19220287IPR009057Homeodomain-like
TIGRFAMsTIGR015658.6E-27226283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLTVTNTTI TTTASVKTPE AETETPTRIQ PSKPSSFSNG VLKRHPAVHH HFHHHHASFN  60
NNSNHHHHHP HAALLVTYKE CLKNHAASLG GHAVDGCGEF MPSPTATPTD PTSLKCAACG  120
CHRNFHRREP EEPLPPPNTT AALEYQPHHR HHPPPPVPPA QRSSGGHSSP SSPSPPPISS  180
SYYPSAPHML LALSAGLSGP PQDSNIPITP TANLGAAVTA GNSNGRKRFR TKFTPNQKEK  240
MLDFAEKIGW KIQKRDEDLI AEFCNEIGVD KGVLKVWMHN NKNTFGKRDQ ANISSGGANS  300
GAAGAAATTD NGNGMEFTIH YHHQNHENNN DNKNGSHNHE LMHHSDSVSA HVVATNGSSS  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-222272841875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620291.11e-120PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF04e-75ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A068U1S40.0A0A068U1S4_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000356351e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-31homeobox protein 34